In the article the author describe an approach to form higher school students cognitive competences by including into the methodological system conceptual links of the metasubject character consisting of the fundamental constructs. The trajectory of the material presentation considering concepts relationship enables to “joint” logically remote parts of the course to ensure that the students develop a more precise knowledge of its separate elements integrative character. The approach facilitates the students to understand the ideal and methodological integrity of the course and the teachers to demonstrate in depth relationship of the discipline separate elements. Presented are experimental data proving that the construction of the course based on the fundamental cognitive constructs takes concept links into account and raises educational material mastering by the stu-dents.